package ExtropyConstants;

=head1 MAIN

ExtropyConstants -- Global constants for extropy

=head1 SYNOPSIS

Boolean:
  TRUE
  FALSE

Constants:
  FACTOR
  AVE_CLONE_LENGTH  (in bases)
  OFFSET

Commands:
  NONE
  MENU_PROJECT
  PROJECT_CREATE
  PROJECT_PICK
  MLG_READ
  LOCUS_READ
  FPC_READ
  QTL_READ
  END_MATCHES_READ
  MTP_READ
  EST_READ
  SEQ_READ
  REL_READ
  CON_READ
  CROSSCHECK_LOCUS_NAMES
  UPDATE_LOCUS_NAMES
  COUNT_CLONE_ANCHORS
  UPDATE_CLONE_ANCHORS
  COUNT_CONTIG_ANCHORS
  UPDATE_CONTIG_ANCHORS
  GFF_FILE_MENU
  GFF_LOCI
  GFF_CLONES
  GFF_CONTIGS
  GFF_QTLS
  GFF_ENDS
  GFF_MTPS
  GFF_ESTS
  GFF_SEQ
  GFF_REL
  GFF_CON
  GFF_ALL
  GFF_WRITE
  STATUS
  RESET
  HELP
  QUIT

=head1 DESCRIPTION

This package consists of a list of global constants for extropy.

=head1 VERSION

0.001 (last update:  6/12/04)

=head1 AUTHOR

Chet Langin, clangin@siu.edu

SIU Plant Biotechnology and Genomics Core-facility

=head1 BUGS

None known.

=head1 SEE ALSO

extropy

=head1 COPYRIGHT

Copyright 2004, Chet Langin, All Rights Reserved.

This program is free software.  You may copy or
redistribute it under the same terms as Perl itself.

=cut

# load the pragmas
use warnings;
use strict;

# load other modules
require Exporter;

our @ISA = qw(Exporter);
our @EXPORT = qw(TRUE FALSE
                 FACTOR AVE_CLONE_LENGTH OFFSET
                 NONE
                 MENU_PROJECT PROJECT_CREATE PROJECT_PICK
                 MLG_READ LOCUS_READ FPC_READ QTL_READ END_MATCHES_READ MTP_READ EST_READ SEQ_READ REL_READ CON_READ
                 CROSSCHECK_LOCUS_NAMES UPDATE_LOCUS_NAMES
                 COUNT_CLONE_ANCHORS UPDATE_CLONE_ANCHORS
                 COUNT_CONTIG_ANCHORS UPDATE_CONTIG_ANCHORS GFF_FILE_MENU
                 GFF_LOCI GFF_CLONES GFF_CONTIGS GFF_QTLS GFF_ENDS GFF_MTPS GFF_ESTS GFF_SEQ GFF_REL GFF_CON
                          GFF_ALL GFF_WRITE
                 STATUS RESET HELP QUIT 
                );

# boolean
use constant FALSE => 0;
use constant TRUE => 1;

# constants
use constant FACTOR => 441824.931130786;
use constant AVE_CLONE_LENGTH => 130500;  # in bases
use constant OFFSET => 10000;  # distance between contigs when spreading them out

# commands
use constant NONE => 0;
use constant MENU_PROJECT => 1;
use constant PROJECT_CREATE => 2;
use constant PROJECT_PICK => 3;
use constant MLG_READ => 4;
use constant LOCUS_READ => 5;
use constant FPC_READ => 6;
use constant QTL_READ => 7;
use constant END_MATCHES_READ => 8;
use constant MTP_READ => 9;
use constant EST_READ => 10;
use constant SEQ_READ => 11;
use constant REL_READ => 12;
use constant CON_READ => 13;
use constant CROSSCHECK_LOCUS_NAMES => 100;
use constant UPDATE_LOCUS_NAMES => 101;
use constant COUNT_CLONE_ANCHORS => 102;
use constant UPDATE_CLONE_ANCHORS => 103;
use constant COUNT_CONTIG_ANCHORS => 104;
use constant UPDATE_CONTIG_ANCHORS => 105;
use constant GFF_FILE_MENU => 106;
use constant GFF_LOCI => 200;
use constant GFF_CLONES => 201;
use constant GFF_CONTIGS => 202;
use constant GFF_QTLS => 203;
use constant GFF_ENDS => 204;
use constant GFF_MTPS => 205;
use constant GFF_ESTS => 206;
use constant GFF_SEQ => 207;
use constant GFF_REL => 208;
use constant GFF_CON => 209;
use constant GFF_ALL => 298;
use constant GFF_WRITE => 299;
use constant STATUS => 900;
use constant RESET => 901;
use constant HELP => 902;
use constant QUIT => 903;

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